Sunbeam Commands

Sunbeam

Run

Usage examples

1. To run all targets (not including extensions):

   sunbeam run --profile /path/to/project/

2. To specify multiple targets:

   sunbeam run --profile /path/to/project/ all_decontam all_assembly all_annotation

4. To run assembly on samples that have already been decontaminated:

   sunbeam run --profile /path/to/project/ --skip decontam all_assembly

Init

Extend

Config